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VIRUS_DB2.0

An Online Crowdsourcing Virus Database for Classification Based on Natural Vector

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  • Introduction

    • Natural Vector method is an advanced approach for virus classification and identification. This system provides a comprehensive database of known viruses and allows users to perform online inquiries. You can explore various virus-related information, submit sequences for analysis, and get results quickly. Feel free to navigate through the other sections to learn more about this system.

  • Mission and Goal

    • This website serves the purpose of storing viral genome reference sequences and related information, providing online tools for computing Natural Vectors of genome sequences submitted by the users, and returning five nearest viruses in our current database according to Natural Vector method.

  • References

    • 1. M Deng, C Yu, Q Liang, R L.He, S S.-T.Yau.(2011). A Novel Method of Characterizing Genetic Sequences: genome space with biological distance and applications, PLoS ONE, Vol. 6, Issue 3, e17293.

    2. C Yu, M Deng, S-Y Cheng, S-C Yau, R L.He, S S.-T.Yau.(2013). Protein space: A Natural Method for Realizing the Nature of Protein Universe, Journal of Theoretical Biology, Vol. 318, 197-204.

    3. C Yu, T Hernandez, H Zheng, S-C Yau, H-H Huang, R L.He, J Yang, S S.-T.Yau.(2013). Real Time Classification of Viruses in 12 Dimensions, PLoS ONE, Vol. 8, No. 5, 1-10.

    4. H-H Huang, C Yu, H Zheng, T Hernandez, S-C Yau, R L.He, J Yang, S S.-T.Yau.(2014). Global Comparison of Multiple-segmented Viruses in 12-dimensional Genome Space, Molecular Phylogenetics and Evolution, Vol. 81, 29-36.

    5. H Zheng, C Yin, T Hoang, R L.He, J Yang, S S.-T.Yau.(2015). Ebolaviruses Classification Based on Natural Vectors, DNA and Cell Biology, Vol. 34, No. 6, 1-11

    6. J Wen, R H.Chan, S-C Yau, R L.He, S S.-T.Yau.(2014). K-mer Natural Vector and its Application to the Phylogenetic Analysis of Genetic Sequences, Gene, Vol. 546, No. 1, 25-34.

    7. S S.-T.Yau, W Mao, M Benson, R L.-He.(2015). Distinguishing Proteins From Arbitrary Amino Acid Sequences, Scientific Reports, Vol. 5, 1-8.

    8. Y Li, K Tian, C Yin, R L.He, S S.-T.Yau.(2016). Virus Classification in 60-dimensional Protein Space, Molecular Phylogenetics and Evolution, Vol. 99, 53-62.

    9. Y Li, L He, R L.He, S S.-T.Yau.(2016). Zika and Flaviviruses Phylogeny based on the Alignment-free Natural Vector Method, DNA and Cell Biology, Vol. 36, No.2, 1-8.

  • Copyright Information

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